Process inputs to scan functions
process_inputs( probs, pheno, addcovar, kinship, n_snp = dim(probs)[3], start_snp = 1, max_iter = 10^4, max_prec = 1/10^8 )
| probs | a three-dimensional array of founder allele probabilities |
|---|---|
| pheno | a matrix of d trait values |
| addcovar | a matrix of covariates |
| kinship | a kinship matrix |
| n_snp | number of markers |
| start_snp | index number of start position in the probs object. |
| max_iter | max number of iterations for EM |
| max_prec | max precision for stopping EM |